SiteSeer
Upstream Sequence Data Binding Site Data
Enter FASTA formated DNA sequences Select Organism

(all sites are from the TRANSFAC public release version 6.0 unless otherwise stated)
     or organism group
Enter list of systematic ORF names
(Saccharomyces cerevisiae ORFs only)
or enter TF binding sites

(FASTA format)
Further Options Thresholds
Select GC content (for background probability) Minimum number of occurences
Automatically determine GC content from input sequence? Yes : No : Expectation value
Combine user defined and TRANSFAC sites? Yes : No : Minimum expectation ratio
Colour scheme? random fixed    
Paul Boardman (peb@bms.umist.ac.uk)
Department of Biomolecular Sciences, UMIST,
P.O. Box 88, Manchester M60 1QD UK
SiteSeer: visualisation and analysis of transcription factor binding sites in nucleotide sequences.
Nucleic Acids Res. 2003 Jul 1;31(13):3572-5.
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